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1

To save or degrade: balancing proteasome homeostasis to maximize cell survival

Marshall, Richard S., Vierstra, Richard D.

Journal:

Year:

2018

Language:

english

File:

PDF, 1.10 MB

english, 2018

2

The Cullin-RING Ubiquitin-Protein Ligases

Hua, Zhihua, Vierstra, Richard D.

Journal:

Annual Review of Plant Biology

Year:

2011

Language:

english

File:

PDF, 868 KB

english, 2011

3

Maize multi-omics reveal roles for autophagic recycling in proteome remodelling and lipid turnover

McLoughlin, Fionn, Augustine, Robert C., Marshall, Richard S., Li, Faqiang, Kirkpatrick, Liam D., Otegui, Marisa S., Vierstra, Richard D.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.05 MB

english, 2018

4

Global reference mapping of human transcription factor footprints

Vierstra, Jeff, Lazar, John, Sandstrom, Richard, Halow, Jessica, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Dunn, Douglas, Neri, Fidencio, Haugen, Eric, Rynes, Eric, Reynolds, Alex, Nelson, Jemma, J

Journal:

Year:

2020

File:

PDF, 4.43 MB

2020

5

The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development

Brian P. Downes, Robert M. Stupar, Derek J. Gingerich, Richard D. Vierstra

Journal:

The Plant Journal

Year:

2003

Language:

english

File:

PDF, 354 KB

english, 2003

6

Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution

Mayer, Andreas, di Iulio, Julia, Maleri, Seth, Eser, Umut, Vierstra, Jeff, Reynolds, Alex, Sandstrom, Richard, Stamatoyannopoulos, John A., Churchman, L. Stirling

Journal:

Year:

2015

Language:

english

File:

PDF, 3.58 MB

english, 2015

7

Autophagy: The Master of Bulk and Selective Recycling

Marshall, Richard S., Vierstra, Richard D.

Journal:

Annual Review of Plant Biology

Year:

2018

Language:

english

File:

PDF, 2.32 MB

english, 2018

8

Resonanz-Raman-spektroskopische Untersuchung der Chromophorheterogenität und Photokonversion in Phytochromkristallen und -lösungen

David von Stetten, Mina Günther, Patrick Scheerer, Daniel H. Murgida, Maria Andrea Mroginski, Norbert Krauß, Tilman Lamparter, Junrui Zhang, David M. Anstrom, Richard D. Vierstra, Katrina T. Forest, P

Journal:

Angewandte Chemie

Year:

2008

Language:

german

File:

PDF, 325 KB

german, 2008

9

Chromophore Heterogeneity and Photoconversion in Phytochrome Crystals and Solution Studied by Resonance Raman Spectroscopy

David von Stetten, Mina Günther, Patrick Scheerer, Daniel H. Murgida, Maria Andrea Mroginski, Norbert Krauß, Tilman Lamparter, Junrui Zhang, David M. Anstrom, Richard D. Vierstra, Katrina T. Forest, P

Journal:

Angewandte Chemie International Edition

Year:

2008

Language:

english

File:

PDF, 325 KB

english, 2008

10

Novel applications of the ubiquitin-dependent proteolytic pathway in plant genetic engineering

David Hondred, Richard D. Vierstra

Journal:

Current Opinion in Biotechnology

Year:

1992

Language:

english

File:

PDF, 568 KB

english, 1992

11

Homologs of the essential ubiquitin conjugating enzymes UBC1, 4, and 5 in yeast are encoded by a multigene family in Arabidopsis thaliana

Pierre-Alain Girod, Tami B. Carpenter, Steven van Nocker, Michael L. Sullivan, Richard D. Vierstra

Journal:

The Plant Journal

Year:

1993

File:

PDF, 1.20 MB

1993

12

The amino-terminus of phytochrome A contains two distinct functional domains

Emily T. Jordan, Joel R. Cherry, Joseph M. Walker, Richard D. Vierstra

Journal:

The Plant Journal

Year:

1996

File:

PDF, 1.84 MB

1996

13

The ubiquitin-activating enzyme (E1) gene family in Arabidopsis thaliana

Peggy M. Hatfield, Mark M. Gosink, Tami B. Carpenter, Richard D. Vierstra

Journal:

The Plant Journal

Year:

1997

File:

PDF, 1.92 MB

1997

14

Sequences within both the N- and C-terminal domains of phytochrome A are required for PFR ubiquitination and degradation

Richard C. Clough, Emily T. Jordan-Beebe, Karin N. Lohman, Jane M. Marita, Joseph M. Walker, Christiane Gatz, Richard D. Vierstra

Journal:

The Plant Journal

Year:

1999

Language:

english

File:

PDF, 492 KB

english, 1999

15

Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteasome

Hongyong Fu, Jed H. Doelling, David M. Rubin, Richard D. Vierstra

Journal:

The Plant Journal

Year:

1999

Language:

english

File:

PDF, 661 KB

english, 1999

16

UPL1 and 2, two 405 kDa ubiquitin–protein ligases from Arabidopsis thaliana related to the HECT-domain protein family

Paul W. Bates, Richard D. Vierstra

Journal:

The Plant Journal

Year:

1999

Language:

english

File:

PDF, 334 KB

english, 1999

17

The ubiquitin-specific protease UBP14 is essential for early embryo development in Arabidopsis thaliana

Jed H. Doelling, Ning Yan, Jasmina Kurepa, Joseph Walker, Richard D. Vierstra

Journal:

The Plant Journal

Year:

2001

Language:

english

File:

PDF, 389 KB

english, 2001

18

Two cDNAs fromArabidopsis thalianaencode putative RNA binding proteins containing glycine-rich domains

Steven Nocker, Richard D. Vierstra

Journal:

Plant Molecular Biology

Year:

1993

Language:

english

File:

PDF, 365 KB

english, 1993

19

Homologues of wheat ubiquitin-conjugating enzymes -TaUBC1 andTaUBC4 are encoded by small multigene families inArabidopsis thaliana

Michael L. Sullivan, Tami B. Carpenter, Richard D. Vierstra

Journal:

Plant Molecular Biology

Year:

1994

Language:

english

File:

PDF, 1.21 MB

english, 1994

20

Proteolysis in plants: mechanisms and functions

Richard D. Vierstra

Journal:

Plant Molecular Biology

Year:

1996

Language:

english

File:

PDF, 3.80 MB

english, 1996

21

Members of two gene families encoding ubiquitin-conjugating enzymes, AtUBC1-3 and AtUBC4-6, fromArabidopsis thalianaare differentially expressed

Sharon Thoma, Michael L. Sullivan, Richard D. Vierstra

Journal:

Plant Molecular Biology

Year:

1996

Language:

english

File:

PDF, 8.13 MB

english, 1996

22

Photoresponses of transgenic tobacco plants expressing an oat phytochrome gene

Alex C. McCormac, Joel R. Cherry, Howard P. Hershey, Richard D. Vierstra, Harry Smith

Journal:

Year:

1991

Language:

english

File:

PDF, 986 KB

english, 1991

23

Avenaphytochrome a overexpressed in transgenic tobacco seedlings differentially affects red/far-red reversible and very-low-fluence responses (cotyledon unfolding) during de-etiolation

Jorge J. Casal, Rodolfo A. Sánchez, Richard D. Vierstra

Journal:

Year:

1994

Language:

english

File:

PDF, 461 KB

english, 1994

24

Carbon metabolism enzymes and photosynthesis in transgenic tobacco (Nicotiana tabacumL.) having excess phytochrome

Thomas D. Sharkey, Terry L. Vassey, Peter J. Vanderveer, Richard D. Vierstra

Journal:

Year:

1991

Language:

english

File:

PDF, 3.04 MB

english, 1991

25

Is the far-red-absorbing form ofAvenaphytochrome A that is present at the end of the day able to sustain stem-growth inhibition during the night in transgenic tobacco and tomato seedlings?

Jorge J. Casal, Rodolfo A. Sánchez, Margaret Boylan, Richard D. Vierstra, Peter H. Quail

Journal:

Year:

1995

Language:

english

File:

PDF, 1.21 MB

english, 1995

26

Characterization of a polyubiquitin gene fromArabidopsis thaliana

Thomas J. Burke, Judy Callis, Richard D. Vierstra

Journal:

Molecular Genetics and Genomics

Year:

1988

Language:

english

File:

PDF, 1001 KB

english, 1988

27

Proteolysis alters the spectral properties of 124 kdalton phytochrome fromAvena

Richard D. Vierstra, Peter H. Quail

Journal:

Year:

1982

Language:

english

File:

PDF, 968 KB

english, 1982

28

Comparison of the effects of exogenous native phytochrome and in-vivo irradiation on in-vitro transcription in isolated nuclei from barley (Hordeum vulgare)

Egon Mösinger, Alfred Batschauer, Richard Vierstra, Klaus Apel, Eberhard Schäfer

Journal:

Year:

1987

Language:

english

File:

PDF, 1.01 MB

english, 1987

29

Native phytochrome: immunoblot analysis of relative molecular mass and in-vitro proteolytic degradation for several plant species

Richard D. Vierstra, Marie-Michèle Cordonnier, Lee H. Pratt, Peter H. Quail

Journal:

Year:

1984

Language:

english

File:

PDF, 1.20 MB

english, 1984

30

Light-regulated overexpression of anArabidopsisphytochrome A gene in rice alters plant architecture and increases grain yield

Ajay K. Garg, Ruairidh J. H. Sawers, Haiyang Wang, Ju-Kon Kim, Joseph M. Walker, Thomas P. Brutnell, Mandayam V. Parthasarathy, Richard D. Vierstra, Ray J. Wu

Journal:

Year:

2006

Language:

english

File:

PDF, 508 KB

english, 2006

31

Ubiquitin C-terminal hydrolases 1 and 2 affect shoot architecture in Arabidopsis

Peizhen Yang, Jan Smalle, Sangsook Lee, Ning Yan, Thomas J. Emborg, Richard D. Vierstra

Journal:

The Plant Journal

Year:

2007

Language:

english

File:

PDF, 1.80 MB

english, 2007

32

The BTB ubiquitin ligases ETO1, EOL1 and EOL2 act collectively to regulate ethylene biosynthesis in Arabidopsis by controlling type-2 ACC synthase levels

Matthew J. Christians, Derek J. Gingerich, Maureen Hansen, Brad M. Binder, Joseph J. Kieber, Richard D. Vierstra

Journal:

The Plant Journal

Year:

2009

Language:

english

File:

PDF, 596 KB

english, 2009

33

Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis

Scott A. Saracco, Maria Hansson, Mark Scalf, Joseph M. Walker, Lloyd M. Smith, Richard D. Vierstra

Journal:

The Plant Journal

Year:

2009

Language:

english

File:

PDF, 409 KB

english, 2009

34

ATG8 lipidation and ATG8-mediated autophagy in Arabidopsis require ATG12 expressed from the differentially controlled ATG12A AND ATG12B loci

Taijoon Chung, Allison R. Phillips, Richard D. Vierstra

Journal:

The Plant Journal

Year:

2010

Language:

english

File:

PDF, 564 KB

english, 2010

35

Autophagy differentially controls plant basal immunity to biotrophic and necrotrophic pathogens

Heike D. Lenz, Eva Haller, Eric Melzer, Karina Kober, Karl Wurster, Mark Stahl, Diane C. Bassham, Richard D. Vierstra, Jane E. Parker, Jaqueline Bautor, Antonio Molina, Viviana Escudero, Takayuki Shin

Journal:

The Plant Journal

Year:

2011

Language:

english

File:

PDF, 616 KB

english, 2011

36

Ubiquitin, a key component in the degradation of plant proteins

Richard D. Vierstra

Journal:

Physiologia Plantarum

Year:

1987

Language:

english

File:

PDF, 399 KB

english, 1987

37

A ubiquitin-based vector for the co-ordinated synthesis of multiple proteins in plants

Joseph M. Walker, Richard D. Vierstra

Journal:

Plant Biotechnology Journal

Year:

2007

Language:

english

File:

PDF, 254 KB

english, 2007

38

Fluorescence Analysis of Oat phyA Deletion Mutants Expressed in Tobacco Suggests that the N-Terminal Domain Determines the Photochemical and Spectroscopic Distinctions between phyA′ and phyA″†

Vitally A. Sineshchekov, Richard C. Clough, Emily T. Jordan-Beebe, Richard D. Vierstra

Journal:

Photochemistry and Photobiology

Year:

1999

Language:

english

File:

PDF, 556 KB

english, 1999

39

Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore

Bhoo, Seong-Hee, Davis, Seth J., Walker, Joseph, Karniol, Baruch, Vierstra, Richard D.

Journal:

Year:

2001

Language:

english

File:

PDF, 187 KB

english, 2001

40

Plant reproduction: Sex and self-denial

Newbigin, Ed, Vierstra, Richard D.

Journal:

Year:

2003

Language:

english

File:

PDF, 91 KB

english, 2003

41

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

Wagner, Jeremiah R., Brunzelle, Joseph S., Forest, Katrina T., Vierstra, Richard D.

Journal:

Year:

2005

Language:

english

File:

PDF, 569 KB

english, 2005

42

Structural basis for the photoconversion of a phytochrome to the activated Pfr form

Ulijasz, Andrew T., Cornilescu, Gabriel, Cornilescu, Claudia C., Zhang, Junrui, Rivera, Mario, Markley, John L., Vierstra, Richard D.

Journal:

Year:

2010

Language:

english

File:

PDF, 1.43 MB

english, 2010

43

The ubiquitin–26S proteasome system at the nexus of plant biology

Vierstra, Richard D.

Journal:

Nature Reviews Molecular Cell Biology

Year:

2009

Language:

english

File:

PDF, 749 KB

english, 2009

44

Soluble, highly fluorescent variants of green fluorescent protein (GFP) for use in higher plants

Seth J. Davis, Richard D. Vierstra

Journal:

Plant Molecular Biology

Year:

1998

Language:

english

File:

PDF, 103 KB

english, 1998

45

Polypeptide tags, ubiquitous modifiers for plant protein regulation

Richard D. Vierstra, Judy Callis

Journal:

Plant Molecular Biology

Year:

1999

Language:

english

File:

PDF, 127 KB

english, 1999

46

ATPase and ubiquitin-binding proteins of the yeast proteasome

David M. Rubin, Steve van Nocker, Michael Glickman, Olivier Coux, Inge Wefes, Seth Sadis, Hongyong Fu, Alfred Goldberg, Richard Vierstra, Daniel Finley*

Journal:

Molecular Biology Reports

Year:

1997

Language:

english

File:

PDF, 1.08 MB

english, 1997

47

Structure and functional analyses of the 26S proteasome subunits from plants – Plant 26S proteasome

Hongyong Fu, Pierre-Alain Girod, Jed H. Doelling, Steven van Nocker, Mark Hochstrasser, Daniel Finley, Richard D. Vierstra

Journal:

Molecular Biology Reports

Year:

1999

Language:

english

File:

PDF, 113 KB

english, 1999

48

Functional analysis of the proteasome regulatory particle

Michael H. Glickman, David M. Rubin, Hongyong Fu, Christopher N. Larsen, Olivier Coux, Inge Wefes, Günter Pfeifer, Zdenka Cjeka, Richard Vierstra, Wolfgang Baumeister, Victor Fried, Daniel Finley

Journal:

Molecular Biology Reports

Year:

1999

Language:

english

File:

PDF, 80 KB

english, 1999

49

THE UBIQUITIN 26S PROTEASOME PROTEOLYTIC PATHWAY

Vierstra, Richard D., Smalle, Jan

Journal:

Annual Review of Plant Biology

Year:

2004

Language:

english

File:

PDF, 828 KB

english, 2004

50

Genes encoding ubiquitin and related proteins

Richard Vierstra

Journal:

Plant Molecular Biology Reporter

Year:

1994

Language:

english

File:

PDF, 97 KB

english, 1994

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